Exoglycosidases

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3. Ayako Kondo, Kazuo Takahashi, Hisateru Yamaguchi, Yuri Yoshida, Tomohiro Mizuno, Kazuki Nakajima, Hiroki Hayashi, Shigehisa Koide, Daijo Inaguma, Midori Hasegawa, Yoshiyuki Hiki, Yukio Yuzawa. Mass spectrometry-based approach for development of biomarkers in IgA nephropathy: a pilot trial. Fujita Medical Journal.2018; 4(2):36-41.
4. Borges CR, Rehder DS.  Glycan structure of Gc Protein-derived Macrophage Activating Factor as revealed by mass spectrometry.  Arch Biochem Biophys. 2016 Sep 15;606:167-79.
5. Chachadi VB, Bhat G, Cheng PW.  Glycosyltransferases involved in the synthesis of MUC-associated metastasis-promoting selectin ligands.  Glycobiology. 2015 Sep;25(9):963-75.
6. Chevreux G, Faid V, Scohyers JM, Bihoreau N.  N-/O-glycosylation analysis of human FVIIa produced in the milk of transgenic rabbits.  Glycobiology. 2013 Dec;23(12):1531-46. 
7. Chokhawala HA, Yu H, Chen X.  High-throughput substrate specificity studies of sialidases by using chemoenzymatically synthesized sialoside libraries.  Chembiochem. 2007 Jan 22;8(2):194-201.
8. Cohen M, Elkabets M, Perlmutter M, Porgador A, Voronov E, Apte RN, Lichtenstein RG.  Sialylation of 3-methylcholanthrene-induced fibrosarcoma determines antitumor immune responses during immunoediting.  J Immunol. 2010 Nov 15;185(10):5869-78.
9. Dashivets T, Thomann M, Rueger P, Knaupp A, Buchner J, Schlothauer T.  Multi-Angle Effector Function Analysis of Human Monoclonal IgG Glycovariants.  PLoS One. 2015 Dec 11;10(12):e0143520. doi: 10.1371/journal.pone.0143520. eCollection 2015.
10. de Vries RP, Smit CH, de Bruin E, Rigter A, de Vries E, Cornelissen LA, Eggink D, Chung NP, Moore JP, Sanders RW, Hokke CH, Koopmans M, Rottier PJ, de Haan CA.  Glycan-dependent immunogenicity of recombinant soluble trimeric hemagglutinin.  J Virol. 2012 Nov;86(21):11735-44.
11. Epp A, Hobusch J, Bartsch YC, Petry J, Lilienthal GM, Koeleman CAM, Eschweiler S, Möbs C, Hall A, Morris SC, Braumann D, Engellenner C, Bitterling J, Rahmöller J, Leliavski A, Thurmann R, Collin M, Moremen KW, Strait RT, Blanchard V, Petersen A, Gemoll T, Habermann JK, Petersen F, Nandy A, Kahlert H, Hertl M, Wuhrer M, Pfützner W, Jappe U, Finkelman FD, Ehlers M.  Sialylation of IgG antibodies inhibits IgG-mediated allergic reactions.  J Allergy Clin Immunol. 2017 Jul 18. pii: S0091-6749(17)31101-6. doi: 10.1016/j.jaci.2017.06.021. [Epub ahead of print]
12. Gilormini PA, Lion C, Vicogne D, Guérardel Y, Foulquier F, Biot C. Chemical glycomics enrichment: imaging the recycling of sialic acid in living cells. J Inherit Metab Dis. 2018 May;41(3):515-523
13. Gomathinayagam S, Hamilton SR. In vitro enzymatic treatment to remove O-linked mannose from intact glycoproteins. Appl Microbiol Biotechnol. 2014 Mar;98(6):2545-54.
14. Hasehira K, Tateno H, Onuma Y, Ito Y, Asashima M, Hirabayashi J.  Structural and quantitative evidence for dynamic glycome shift on production of induced pluripotent stem cells.  Mol Cell Proteomics. 2012 Dec;11(12):1913-23.
15. Hershkovitz O, Jarahian M, Zilka A, Bar-Ilan A, Landau G, Jivov S, Tekoah Y, Glicklis R, Gallagher JT, Hoffmann SC, Zer H, Mandelboim O, Watzl C, Momburg F, Porgador A.  Altered glycosylation of recombinant NKp30 hampers binding to heparan sulfate: a lesson for the use of recombinant immunoreceptors as an immunological tool.  Glycobiology. 2008 Jan;18(1):28-41.
16. Horiuchi R, Nakajima Y, Kashiwada S, Miyanishi N. Effects of silver nanocolloids on plant complex type N-glycans in Oryza sativa roots. Sci Rep. 2018 Jan 17;8:1000
17. Huang W, Giddens J, Fan SQ, Toonstra C, Wang LX.  Chemoenzymatic glycoengineering of intact IgG antibodies for gain of functions.  J Am Chem Soc. 2012 Jul 25;134(29):12308-18.
18. Huang W, Giddens J, Fan SQ, Toonstra C, Wang LX. Chemoenzymatic glycoengineering of intact IgG antibodies for gain of functions. J Am Chem Soc. 2012 Jul 25;134(29):12308-18.
19. Ibáñez-Vea M, Huang H, Martínez de Morentin X, Pérez E, Gato M, Zuazo M, Arasanz H, Fernández-Irigoyen J, Santamaría E, Fernandez-Hinojal G, Larsen MR, Escors D, Kochan G. Characterization of Macrophage Endogenous S-Nitrosoproteome Using a Cysteine-Specific Phosphonate Adaptable Tag in Combination with TiO2 Chromatography. J Proteome Res. 2018 Mar 2;17(3):1172-1182.
20. Jayachandran R, Radcliffe CM, Royle L, Harvey DJ, Dwek RA, Rudd PM, Karande AA.  Oligosaccarides modulate the apoptotic activity of glycodelin.  Glycobiology. 2006 Nov;16(11):1052-63.
21. Kim MW, Rhee SK, Kim JY, Shimma Y, Chiba Y, Jigami Y, Kang HA. Glycobiology. 2004 Mar;14(3):243-51. Epub 2003 Dec 23.
22. Kobata A. Use of endo- and exoglycosidases for structural studies of glycoconjugates. Anal Biochem. 1979 Nov 15;100(1):1-14.
23. Kurz S, Jin C, Hykollari A, Gregorich D, Giomarelli B, Vasta GR, Wilson IB, Paschinger K.  Hemocytes and plasma of the eastern oyster (Crassostrea virginica) display a diverse repertoire of sulfated and blood group A-modified N-glycans.  J Biol Chem. 2013 Aug 23;288(34):24410-28.
24. Larsson EA, Olsson U, Whitmore CD, Martins R, Tettamanti G, Schnaar RL, Dovichi NJ, Palcic MM, Hindsgaul O.  Synthesis of reference standards to enable single cell metabolomic studies of tetramethylrhodamine-labeled ganglioside GM1.  Carbohydr Res. 2007 Feb 26;342(3-4):482-9
25. Liang W, Mao S, Sun S, Li M, Li Z, Yu R, Ma T, Gu J, Zhang J, Taniguchi N, Li W. Core Fucosylation of the T Cell Receptor Is Required for T Cell Activation. Front Immunol. 2018 Jan 29;9:78.
26. Lloyd KA, Steen J, Amara K, Titcombe PJ, Israelsson L, Lundström SL, Zhou D, Zubarev RA, Reed E, Piccoli L, Gabay C, Lanzavecchia A, Baeten D, Lundberg K, Mueller DL, Klareskog L, Malmström V, Grönwall C. Variable domain N-linked glycosylation and negative surface charge are key features of monoclonal ACPA: Implications for B-cell selection. Eur J Immunol. 2018 Jun;48(6):1030-1045.
27. Malakhov MP, Aschenbrenner LM, Smee DF, Wandersee MK, Sidwell RW, Gubareva LV, Mshin VP, Hayden FG, Kim DH, Ing A, Campbell ER, Yu M, Fang F.  Sialidase fusion protein as a novel broad-spectrum inhibitor of influenza virus infection.  Antimicrob Agents Chemother. 2006 Apr;50(4):1470-9.
28. Matsuda C, Shiota Y, Sheikh AM, Okazaki R, Yamada K, Yano S, Minohata T, Matsumoto KI, Yamaguchi S, Nagai A. Quantification of CSF cystatin C using liquid chromatography tandem mass spectrometry. Clin Chim Acta. 2018 Mar;478:1-6
29. Nguyen-Khuong T, Everest-Dass AV, Kautto L, Zhao Z, Willcox MD, Packer NH. Glycomic characterization of basal tears and changes with diabetes and diabetic retinopathy. Glycobiology. 2015 Mar;25(3):269-83.
30. Pagan JD, Kitaoka M, Anthony RM. Engineered Sialylation of Pathogenic Antibodies In Vivo Attenuates Autoimmune Disease. Cell. 2018 Jan 25;172(3):564-577.
31. Paulson JC, Prieels JP, Glasgow LR, Hill RL. Sialyl- and fucosyltransferases in the biosynthesis of asparaginyl-linked oligosaccharides in glycoproteins. Mutually exclusive glycosylation by beta-galactoside alpha2 goes to 6 sialyltransferase and N-acetylglucosaminide alpha1 goes to 3 fucosyltransferase. J Biol Chem. 1978 Aug 25;253(16):5617-24.
32. Ravidà A, Aldridge AM, Driessen NN, Heus FA, Hokke CH, O'Neill SM.  Fasciola hepatica Surface Coat Glycoproteins Contain Mannosylated and Phosphorylated N-glycans and Exhibit Immune Modulatory Properties Independent of the Mannose Receptor.  PLoS Negl Trop Dis. 2016 Apr 22;10(4):e0004601.
33. Reesink HL, Bonnevie ED, Liu S, Shurer CR, Hollander MJ, Bonassar LJ, Nixon AJ.   Galectin-3 Binds to Lubricin and Reinforces the Lubricating Boundary Layer of Articular Cartilage.  Sci Rep. 2016 May 9;6:25463.
34. Sandra K, Dolashka-Angelova P, Devreese B, Van Beeumen J.  New insights in Rapana venosa hemocyanin N-glycosylation resulting from on-line mass spectrometric analyses.  Glycobiology. 2007 Feb;17(2):141-56.
35. Schauer R.  Chemistry, metabolism, and biological functions of sialic acids.  Adv Carbohydr Chem Biochem. 1982;40:131-234.
36. Šesták S, Bella M, Klunda T, Gurská S, Džubák P, Wöls F, Wilson IBH, Sladek V, Hajdúch M, Poláková M, Kóňa J. N-Benzyl Substitution of Polyhydroxypyrrolidines: The Way to Selective Inhibitors of Golgi α-Mannosidase II. ChemMedChem. 2018 Feb 20;13(4):373-383.
37. Shaaltiel Y, Bartfield D, Hashmueli S, Baum G, Brill-Almon E, Galili G, Dym O, Boldin-Adamsky SA, Silman I, Sussman JL, Futerman AH, Aviezer D.  Production of glucocerebrosidase with terminal mannose glycans for enzyme replacement therapy of Gaucher's disease using a plant cell system.  Plant Biotechnol J. 2007 Sep;5(5):579-90.
38. Shan M, Klasse PJ, Banerjee K, Dey AK, Iyer SPN, Dionisio R, Charles D, Campbell-Gardener L, Olson WC, Sanders RW, Moore JP. HIV-1 gp120 Mannoses Induce Immunosuppressive Responses from Dendritic Cells. PLoS Pathog. 2007 Nov; 3(11): e169
39. Shields RL, Lai J, Keck R, O’Connell LY, Hong K, Meng YG, Weikert SH, Presta LG. Lack of fucose on human IgG1 N-linked oligosaccharide improves binding to human Fcgamma RIII and antibody-dependent cellular toxicity. J Biol Chem. 2002 Jul 26;277(30):26733-40.
40. Song T, Aldredge D, Lebrilla CB.  A Method for In-Depth Structural Annotation of Human Serum Glycans That Yields Biological Variations.  Anal Chem. 2015 Aug 4;87(15):7754-62.
41. Stavenhagen K, Kayili HM, Holst S, Koeleman CAM, Engel R, Wouters D, Zeerleder S, Salih B, Wuhrer M. N- and O-glycosylation Analysis of Human C1-inhibitor Reveals Extensive Mucin-type O-Glycosylation. Mol Cell Proteomics. 2018 Jun;17(6):1225-1238.
42. Stefanich EG, Ren S, Danilenko DM, Lim A, Song A, Iyer S, Fielder PJ.  Evidence for an asialoglycoprotein receptor on nonparenchymal cells for O-linked glycoproteins.  J Pharmacol Exp Ther. 2008 Nov;327(2):308-15.
43. Storr SJ, Royle L, Chapman CJ, Hamid UM, Robertson JF, Murray A, Dwek RA, Rudd PM.  The O-linked glycosylation of secretory/shed MUC1 from an advanced breast cancer patient's serum.  Glycobiology. 2008 Jun;18(6):456-62.
44. Sudo M, Yamaguchi Y, Späth PJ, Matsumoto-Morita K, Ong BK, Shahrizaila N, Yuki N.  Different IVIG glycoforms affect in vitro inhibition of anti-ganglioside antibody-mediated complement deposition.  PLoS One. 2014 Sep 26;9(9):e107772. doi: 10.1371/journal.pone.0107772. eCollection 2014.
45. Suila H, Hirvonen T, Ritamo I, Natunen S, Tuimala J, Laitinen S, Anderson H, Nystedt J, Räbinä J, Valmu L.  Extracellular o-linked N-acetylglucosamine is enriched in stem cells derived from human umbilical cord blood.  Biores Open Access. 2014 Apr 1;3(2):39-44.
46. Szabo Z, Thayer JR, Reusch D, Agroskin Y, Viner R, Rohrer J, Patil SP, Krawitzky M, Huhmer A, Avdalovic N, Khan SH, Liu Y, Pohl C. High Performance Anion Exchange and Hydrophilic Interaction Liquid Chromatography Approaches for Comprehensive Mass Spectrometry-Based Characterization of the N-Glycome of a Recombinant Human Erythropoietin. J Proteome Res. 2018 Apr 6;17(4):1559-1574.
47. Tanaka-Okamoto M, Hanzawa K, Mukai M, Takahashi H, Ohue M, Miyamoto Y. Identification of internally sialylated carbohydrate tumor marker candidates, including Sda/CAD antigens, by focused glycomic analyses utilizing the substrate specificity of neuraminidase. Glycobiology. 2018 May 1;28(5):247-260.
48. Tanaka-Okamoto M, Yabu M, Mukai M, Takahashi H, Fujiwara Y, Ohue M, Kamada Y, Miyoshi E, Miyamoto Y.  Elevation of CA19-9-Related Novel Marker, Core 1 Sialyl Lewis A, in Sera of Adenocarcinoma Patients Verified by a SRM-Based Method.  J Proteome Res. 2016 Jan 4;15(1):152-65.
49. Thak EJ, Kim J, Lee DJ, Kim JY, Kang HA. Structural analysis of N-/O-glycans assembled on proteins in yeasts. J Microbiol. 2018 Jan;56(1):11-23.
50. Tharakaraman K, Raman R, Viswanathan K, Stebbins NW, Jayaraman A, Krishnan A, Sasisekharan V, Sasisekharan R.  Structural determinants for naturally evolving H5N1 hemagglutinin to switch its receptor specificity.  Cell. 2013 Jun 20;153(7):1475-85.
51. Thennati R, Singh SK, Nage N, Patel Y, Bose SK, Burade V, Ranbhor RS. Analytical characterization of recombinant hCG and comparative studies with reference product. Biologics. 2018 Jan 30;12:23-35.
52. Thomann M, Schlothauer T, Dashivets T, Malik S, Avenal C, Bulau P, Rüger P, Reusch D. In vitro glycoengineering of IgG1 and its effect on Fc receptor binding and ADCC activity.  PLoS One. 2015 Aug 12;10(8):e0134949. doi: 10.1371/journal.pone.0134949. eCollection 2015.
53. Uchida Y, Tsukada Y, Sugimori T.  Enzymatic properties of neuraminidases from Arthrobacter ureafaciens. J Biochem. 1979 Nov;86(5):1573-85.
54. Umemoto E, Tanaka T, Kanda H, Jin S, Tohya K, Otani K, Matsutani T, Matsumoto M, Ebisuno Y, Jang MH, Fukuda M, Hirata T, Miyasaka M. Nepmucin, a novel HEV sialomucin, mediates L-selectin-dependent lymphocyte rolling and promotes lymphocyte adhesion under flow. J Exp Med. 2006 Jun 12;203(6):1603-14.
55. Won-Suk Song, Han-Gyu Park, Da-Hee Ann, Yoon-Yi Jeong, Mi-Young Koo, Yun-Gon Kim. Quantitative Analysis of Core-Fucosylated N-glycome according to Serum AFP Level for the Diagnosis of Hepatocellular Carcinoma. KSBB Journal. Vol.32 No.4(Wn.163), 2017.12, 279-285
56. Xu G, Potter JA, Russell RJ, Oggioni MR, Andrew PW, Taylor GL. Crystal structure of the NanB sialidase from Streptococcus pneumoniae. J Mol Biol. 2008 Dec 12;384(2):436-49.
57. Yamane-Ohnuki N, Satoh M. Production of therapeutic antibodies with controlled fucosylation. MAbs. 2009 May-Jun;1(3):230-6.
58. Yamashita K, Ohkura T, Yoshima H, Kobata A. Substrate specificity of Diplococcal beta-N-acetylhexosaminidase, a useful enzyme for the structural studies of complex type asparagine-linked sugar chains. Biochem Biophys Res Commun. 1981 May 15;100(1):226-32.
59. Yin H, An M, So PK, Wong MY, Lubman DM, Yao Z. The analysis of alpha-1-antitrypsin glycosylation with direct LC-MS/MS. Electrophoresis. 2018 Feb 5. doi: 10.1002/elps.201700426. [Epub ahead of print]
60. Yu Y, Mishra S, Song X, Lasanajak Y, Bradley KC, Tappert MM, Air GM, Steinhauer DA, Halder S, Cotmore S, Tattersall P, Agbandje-McKenna M, Cummings RD, Smith DF.  Functional glycomic analysis of human milk glycans reveals the presence of virus receptors and embryonic stem cell biomarkers.  J Biol Chem. 2012 Dec 28;287(53):44784-99.
61. Zhai S, Xu H, Jiang X, Sun S, Qin L, Wei D, Hu L.  Expression Depression of CD300LG-γ in Human Pulmonary Carcinoma.  Monoclon Antib Immunodiagn Immunother. 2016 Apr;35(2):94-9.
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