###############################################################################
#                                                                             #
#  Filename   : urlsAccessionNum.txt                                          #
#                                                                             #
#  Created    : July 15, 1995						      #
#									      #
#  Updated    : July 22, 2003		  				      #
#                                                                             #
#  Purpose    : Contains remote database URL definitions to enable HTML links #
#               from accession numbers in SpectrumMill results pages.         #
#                                                                             #
#  Author(s)  : Peter Baker and Karl Clauser                                  #
#                                                                             #
#  This file is the confidential and proprietary product of The Regents of    #
#  the University of California and Millennium Pharamaceuticals Inc.          #
#                                                                             #
#  Copyright (1997-1998) The Regents of the University of California.         #
#  Copyright (1999-2003) Millennium Pharamaceuticals Inc.                          #
#  Copyright (2003) Agilent Technologies, Inc.
#                                                                             #
#  All rights reserved.                                                       #
#                                                                             #
###############################################################################
#
# There can be no blank lines but all lines beginning with # may
# contain comments and are ignored by the programs.
#
# An entry for an HTML link from the accession number MUST contain 1 line:
#
# The line must contain the following information:
# a) The prefix name for the database as listed in the html input
#    page for each program. The prefix should be long enough to
#    uniquely identify the database or set of databases you wish to refer to. 
# b) The URL to link to if the accession number for the
#    entry is added to the end of the URL. The URL addition is internal
#    to the programs and is expected to retrieve a fully annotated entry
#    from a remote database.
#
# Note that this link need not be to to a sequence database. The link could
# be to whatever a SpectrumMill server administrator specifies.
#
# The lowercase prefixes (gen, nr, etc) can be used for a second database that is
# of the same format as the uppercase one.
#
# See http://www.ncbi.nlm.nih.gov/entrez/query/static/linking.html for creating links into
# NCBI databases.
#
# For more details and examples see millhtml/SM_instruct/servadmn.htm#update_acclinks
#
Genpept		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
#gen		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
SwissProt	http://us.expasy.org/cgi-bin/sprot-search-ac?
#swp		http://us.expasy.org/cgi-bin/sprot-search-ac?
NCBInr		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
#nr		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
dbEST		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
#dbest		http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=protein&dopt=GenPept&list_uids=
#
#The 3 prefixes below are for generic DNA databases supplied by the user.
#Currently, the link merely goes to directions on how to edit this file.
#
DN	../millhtml/SM_instruct/servadmn.htm#update_acclinks?
DA	../millhtml/SM_instruct/servadmn.htm#update_acclinks?
PN	../millhtml/SM_instruct/servadmn.htm#update_acclinks?
PA	../millhtml/SM_instruct/servadmn.htm#update_acclinks?
#END OF FILE (DO NOT REMOVE THIS LINE)
